Basic Information
Locus ID:
evm.TU.utg000027l.361
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
Fasciclin-like arabinogalactan protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000027l | 5373911 | 5378398 | + | evm.TU.utg000027l.361 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.97 | 51,181.06 Da | 37.85 | 71.52 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02469 | Fasciclin domain | 276 | 408 | 7.4E-24 | IPR000782 |
| Pfam | PF00808 | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 133 | 196 | 7.5E-14 | IPR003958 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 260 | 409 | 9.42E-29 | IPR036378 |
| SUPERFAMILY | SSF47113 | Histone-fold | 132 | 211 | 1.17E-14 | IPR009072 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 244 | 408 | 4.6E-21 | IPR036378 |
| Gene3D | G3DSA:1.10.20.10 | Histone, subunit A | 94 | 211 | 1.3E-23 | IPR009072 |
| SMART | SM00554 | fasc_3 | 305 | 409 | 4.7E-26 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 264 | 406 | 22.639444 | IPR000782 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 417 | 437 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 129 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 46 | 71 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 31 | 45 | - | - |
| Coils | Coil | Coil | 9 | 29 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60490.1 | FASCICLIN-like arabinogalactan-protein 12. | 0 |
| RefSeq | XP_011029966.1 | PREDICTED: fasciclin-like arabinogalactan protein 12 [Populus euphratica] | 0 |
| Q8LEE9 | Fasciclin-like arabinogalactan protein 12 OS=Arabidopsis thaliana OX=3702 GN=FLA12 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2P2Q8P5 | FAS1 domain-containing protein OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology