Basic Information
Locus ID:
evm.TU.utg000027l.357
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000027l | 5347337 | 5350053 | - | evm.TU.utg000027l.357 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.61 | 35,154.59 Da | 53.32 | 77.48 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 260 | 300 | 3.06086E-25 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 259 | 305 | 1.9E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 260 | 306 | 1.55E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 248 | 310 | 3.4E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 261 | 299 | 3.0E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 261 | 300 | 11.309038 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09770.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021628088.1 | probable E3 ubiquitin-protein ligase LOG2 [Manihot esculenta] | 0 |
| Q9S752 | Probable E3 ubiquitin-protein ligase LOG2 OS=Arabidopsis thaliana OX=3702 GN=LOG2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2IZ71 | RING-type E3 ubiquitin transferase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology