Basic Information
Locus ID:
evm.TU.utg000027l.132
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
transcriptional co-repressor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000027l | 1518974 | 1530071 | + | evm.TU.utg000027l.132 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.25 | 68,878.15 Da | 48.23 | 77.39 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 331 | 620 | 6.68052E-50 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 584 | 620 | 0.026 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 379 | 409 | 3.0E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 342 | 367 | 5.2E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 504 | 535 | 0.011 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 329 | 620 | 8.61E-57 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 465 | 620 | 2.7E-22 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 303 | 464 | 3.0E-29 | IPR015943 |
| SMART | SM00320 | WD40_4 | 539 | 578 | 270.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 413 | 453 | 0.34 | IPR001680 |
| SMART | SM00320 | WD40_4 | 581 | 620 | 0.024 | IPR001680 |
| SMART | SM00320 | WD40_4 | 370 | 409 | 8.3E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 456 | 494 | 36.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 497 | 535 | 2.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 328 | 367 | 8.3E-6 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 335 | 370 | 9.309238 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 588 | 620 | 12.246197 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 377 | 409 | 11.233774 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 377 | 409 | 13.549507 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 335 | 370 | 11.109979 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 588 | 620 | 11.523771 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 440 | 454 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 354 | 368 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 354 | 368 | 6.0E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 396 | 410 | 6.0E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 607 | 620 | 6.0E-6 | IPR020472 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_012091623.1 | transcriptional corepressor LEUNIG_HOMOLOG isoform X2 [Jatropha curcas] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A7N2LPW9 | LisH domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology