Basic Information
Locus ID:
evm.TU.utg000025l.94
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
Belongs to the cullin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000025l | 1423028 | 1425747 | - | evm.TU.utg000025l.94 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.57 | 35,869.32 Da | 49.28 | 91.83 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00888 | Cullin family | 5 | 109 | 1.3E-20 | IPR001373 |
| Pfam | PF00888 | Cullin family | 258 | 301 | 5.1E-11 | IPR001373 |
| Pfam | PF00888 | Cullin family | 113 | 260 | 5.1E-35 | IPR001373 |
| SUPERFAMILY | SSF75632 | Cullin homology domain | 112 | 303 | 6.8E-44 | IPR036317 |
| SUPERFAMILY | SSF74788 | Cullin repeat-like | 3 | 124 | 1.83E-28 | IPR016159 |
| Gene3D | G3DSA:1.20.1310.10 | Cullin Repeats | 113 | 224 | 6.7E-25 | - |
| Gene3D | G3DSA:3.30.230.130 | Cullin; Chain C, Domain 2 | 256 | 306 | 2.4E-12 | - |
| Gene3D | G3DSA:6.10.280.240 | - | 56 | 100 | 6.7E-8 | - |
| Gene3D | G3DSA:1.20.1310.10 | Cullin Repeats | 1 | 52 | 7.2E-9 | - |
| SMART | SM00182 | cul_2 | 145 | 278 | 1.1E-12 | IPR016158 |
| ProSiteProfiles | PS50069 | Cullin family profile. | 258 | 298 | 10.783401 | IPR016158 |
| ProSiteProfiles | PS50069 | Cullin family profile. | 115 | 257 | 21.880014 | IPR016158 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G46210.1 | cullin4. Arabidopsis CULLIN4 (CUL4) forms an E3 ubiquitin ligase with the CDD complex and a common catalytic subunit RBX1 in mediating light control of development. This CUL4-based E3 ligase is essential for the repression of photomorphogenesis. The partial loss of CUL4 function resulted in a constitutive photomorphogenic phenotype with respect to morphogenesis and light-regulated gene expression. CUL4 exhibits a synergistic genetic interaction with COP10 and DET1. | 0 |
| RefSeq | XP_034704404.1 | cullin-4 [Vitis riparia] | 0 |
| Q8LGH4 | Cullin-4 OS=Arabidopsis thaliana OX=3702 GN=CUL4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2MF66 | CULLIN_2 domain-containing protein OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for evm.TU.utg000025l.94.