Basic Information
Locus ID:
evm.TU.utg000025l.50
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000025l | 895490 | 900287 | + | evm.TU.utg000025l.50 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.75 | 94,905.46 Da | 61.93 | 66.95 | -0.84 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 784 | 824 | 4.47051E-19 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 782 | 829 | 3.0E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 773 | 830 | 2.23E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 770 | 835 | 8.9E-13 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 785 | 824 | 10.704165 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 325 | 345 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 38 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 74 | 97 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 108 | 127 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 72 | 99 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 658 | 679 | - | - |
| Coils | Coil | Coil | 232 | 259 | - | - |
| Coils | Coil | Coil | 713 | 740 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27950.1 | Ring/U-Box superfamily protein. | 0 |
| RefSeq | XP_021658463.1 | uncharacterized protein LOC110648515 isoform X3 [Hevea brasiliensis] | 0 |
| TrEMBL | A0A8T2YYI4 | RING-type domain-containing protein OS=Populus deltoides OX=3696 GN=H0E87_007833 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology