Basic Information
Locus ID:
evm.TU.utg000025l.49
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000025l | 871565 | 879442 | - | evm.TU.utg000025l.49 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.82 | 109,726.05 Da | 39.01 | 78.37 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15539 | PHD1_AIRE | 641 | 681 | 2.44514E-17 | - |
| Pfam | PF00628 | PHD-finger | 642 | 683 | 2.0E-8 | IPR019787 |
| Pfam | PF16135 | Tify domain binding domain | 575 | 625 | 5.8E-14 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 389 | 444 | 8.7E-16 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 626 | 684 | 9.26E-18 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 723 | 781 | 2.67E-7 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 628 | 706 | 8.2E-20 | IPR013083 |
| Gene3D | G3DSA:3.40.630.30 | - | 825 | 999 | 4.8E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 725 | 786 | 9.2E-9 | IPR013083 |
| SMART | SM00249 | PHD_3 | 728 | 784 | 0.053 | IPR001965 |
| SMART | SM00249 | PHD_3 | 641 | 682 | 2.7E-12 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 639 | 684 | 10.593599 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 642 | 681 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 179 | 218 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 183 | 207 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27980.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_021674551.1 | uncharacterized protein LOC110660522 [Hevea brasiliensis] | 0 |
| Q6PDQ2 | Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus OX=10090 GN=Chd4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2C9V1E1 | PHD-type domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_11G153000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology