Basic Information
Locus ID:
evm.TU.utg000025l.3
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000025l | 138771 | 153033 | - | evm.TU.utg000025l.3 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.89 | 137,065.19 Da | 48.55 | 73.31 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 743 | 799 | 7.47224E-30 | - |
| Pfam | PF01426 | BAH domain | 480 | 591 | 5.7E-12 | IPR001025 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 808 | 1166 | 6.9E-36 | IPR001525 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 744 | 797 | 8.7E-10 | IPR023780 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 736 | 799 | 2.02E-12 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 634 | 1169 | 6.47E-77 | IPR029063 |
| Gene3D | G3DSA:2.30.30.490 | - | 396 | 579 | 2.7E-43 | IPR043151 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 962 | 1135 | 1.5E-243 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 636 | 1186 | 1.5E-243 | - |
| SMART | SM00298 | chromo_7 | 743 | 802 | 8.7E-9 | IPR000953 |
| SMART | SM00439 | BAH_4 | 478 | 594 | 1.1E-21 | IPR001025 |
| TIGRFAM | TIGR00675 | dcm: DNA (cytosine-5-)-methyltransferase | 812 | 1165 | 1.7E-31 | IPR001525 |
| PIRSF | PIRSF037404 | DNMT1 | 567 | 707 | 4.6E-6 | IPR017198 |
| PIRSF | PIRSF037404 | DNMT1 | 64 | 272 | 93.0 | IPR017198 |
| PIRSF | PIRSF037404 | DNMT1 | 457 | 569 | 4.5E-6 | IPR017198 |
| PIRSF | PIRSF037404 | DNMT1 | 1090 | 1176 | 1.0E-22 | IPR017198 |
| PIRSF | PIRSF037404 | DNMT1 | 798 | 1062 | 6.9E-38 | IPR017198 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 744 | 797 | 13.136701 | IPR000953 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 478 | 594 | 19.25062 | IPR001025 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 634 | 1176 | 45.514889 | IPR001525 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 767 | 787 | - | IPR023779 |
| ProSitePatterns | PS00095 | C-5 cytosine-specific DNA methylases C-terminal signature. | 1151 | 1169 | - | IPR031303 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 814 | 826 | - | IPR018117 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 635 | 651 | 3.2E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 857 | 871 | 3.2E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 903 | 916 | 3.2E-12 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 119 | 162 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 131 | 158 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 82 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 50 | 70 | - | - |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19020.1 | chromomethylase 2. | 0 |
| RefSeq | XP_012066500.1 | DNA (cytosine-5)-methyltransferase CMT2 isoform X2 [Jatropha curcas] | 0 |
| Q94F87 | DNA (cytosine-5)-methyltransferase CMT2 OS=Arabidopsis thaliana OX=3702 GN=CMT2 PE=2 SV=3 | 0 | |
| TrEMBL | A0A2K2B4M4 | Cytosine-specific methyltransferase OS=Populus trichocarpa OX=3694 GN=POPTR_003G100000 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology