Basic Information
Locus ID:
evm.TU.utg000022l.428
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000022l | 7071349 | 7076955 | - | evm.TU.utg000022l.428 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.84 | 122,411.53 Da | 43.52 | 72.84 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 835 | 872 | 0.0097 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 924 | 956 | 0.11 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 750 | 1062 | 3.93E-46 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 285 | 571 | 4.82E-15 | IPR011009 |
| Gene3D | G3DSA:2.130.10.10 | - | 724 | 1062 | 1.1E-116 | IPR015943 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 285 | 569 | 1.8E-20 | - |
| SMART | SM00320 | WD40_4 | 875 | 914 | 0.69 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1023 | 1062 | 94.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 832 | 872 | 2.8E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 918 | 956 | 2.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 740 | 779 | 2.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 790 | 829 | 0.013 | IPR001680 |
| SMART | SM00320 | WD40_4 | 967 | 1006 | 20.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 839 | 881 | 10.742378 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 925 | 958 | 10.126507 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 814 | 838 | 9.138305 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 925 | 965 | 12.279615 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 943 | 957 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 816 | 830 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 859 | 873 | 1.2E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 943 | 957 | 1.2E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 816 | 830 | 1.2E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 36 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 37 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11110.1 | SPA1-related 2. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA2 primarily regulates seedling development in darkness and has little function in light-grown seedlings or adult plants. | 0 |
| RefSeq | XP_034894844.1 | protein SPA1-RELATED 2 [Populus alba] | 0 |
| Q9T014 | Protein SPA1-RELATED 2 OS=Arabidopsis thaliana OX=3702 GN=SPA2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2JGB6 | Protein kinase domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology