Basic Information
Locus ID:
evm.TU.utg000022l.247
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000022l | 5260403 | 5296627 | + | evm.TU.utg000022l.247 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.81 | 487,823.78 Da | 42.84 | 90.87 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 109 | 5.1E-31 | IPR026854 |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3230 | 3497 | 5.0E-12 | IPR009543 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 565 | 786 | 7.0E-33 | IPR031642 |
| Pfam | PF00169 | PH domain | 808 | 916 | 3.6E-6 | IPR001849 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2223 | 2418 | 3.0E-10 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 1989 | 2152 | 4.1E-11 | IPR009291 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 133 | 374 | 1.3E-65 | IPR031646 |
| SUPERFAMILY | SSF50729 | PH domain-like | 802 | 934 | 3.97E-6 | - |
| SMART | SM00694 | dysfc | 2941 | 2978 | 5.9E-4 | IPR006614 |
| ProSiteProfiles | PS50003 | PH domain profile. | 814 | 917 | 7.0136 | IPR001849 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 3026 | 3047 | - | - |
| Coils | Coil | Coil | 108 | 128 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17140.3 | pleckstrin homology (PH) domain-containing protein. | 0 |
| RefSeq | XP_021649531.1 | uncharacterized protein LOC110641940 isoform X2 [Hevea brasiliensis] | 0 |
| G0S3B8 | Intermembrane lipid transfer protein VPS13 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) OX=759272 GN=VPS13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2MGV9 | PH domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology