halophFGD

Basic Information

Locus ID: evm.TU.utg000019l.900

Species & Taxonomic ID: Kandelia candel & 61147

Genome Assembly: GCA_037832225.1

Description: LEC14B homolog

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
PERG.utg000019l	9341311	9345678	+	evm.TU.utg000019l.900

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.69	52,774.34 Da	41.57	70.92	-0.58

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00400	WD domain, G-beta repeat	249	281	0.0022	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	294	327	0.029	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	201	238	0.026	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	366	409	0.028	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	416	450	2.7E-5	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	109	451	2.01E-53	IPR036322
Gene3D	G3DSA:2.130.10.10	-	100	368	5.5E-35	IPR015943
Gene3D	G3DSA:2.130.10.10	-	369	458	5.6E-16	IPR015943
SMART	SM00320	WD40_4	100	135	170.0	IPR001680
SMART	SM00320	WD40_4	194	238	0.038	IPR001680
SMART	SM00320	WD40_4	241	281	1.9E-4	IPR001680
SMART	SM00320	WD40_4	412	451	2.3E-8	IPR001680
SMART	SM00320	WD40_4	288	327	0.0022	IPR001680
SMART	SM00320	WD40_4	364	409	0.4	IPR001680
PIRSF	PIRSF038135	WD_rpt_23	1	467	1.4E-204	IPR017399
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	419	451	9.862871	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	295	336	12.480124	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	248	281	8.676514	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	419	451	11.811761	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	248	281	10.307941	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	213	247	9.773251	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	295	329	9.836508	-
PRINTS	PR00320	G protein beta WD-40 repeat signature	314	328	6.0E-5	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	268	282	6.0E-5	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	438	452	6.0E-5	IPR020472
MobiDBLite	mobidb-lite	consensus disorder prediction	1	33	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	11	33	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K11801 (DDB1- and CUL4-associated factor 11)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G03020.1	transducin family protein / WD-40 repeat family protein.
RefSeq	XP_021607307.1	LEC14B homolog [Manihot esculenta]
Swiss-Prot	O24467	LEC14B homolog OS=Prunus armeniaca OX=36596 PE=2 SV=1
TrEMBL	A0A251LC93	LEC14B homolog OS=Manihot esculenta OX=3983 GN=MANES_03G189300 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg27965, jg8840
Aizoaceae	Mesembryanthemum crystallinum	1	gene_4240
Amaranthaceae	Atriplex hortensis	2	Ah020659, Ah029679
Amaranthaceae	Beta vulgaris	1	BVRB_7g165700
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg16358, Sbi_jg35803, Sbi_jg51804, Sbi_jg829
Amaranthaceae	Salicornia europaea	2	Seu_jg13358, Seu_jg3896
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00019786
Amaranthaceae	Suaeda glauca	2	Sgl72037, Sgl75604
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000006827, gene:ENSEOMG00000012738 ... gene:ENSEOMG00000030023, gene:ENSEOMG00000034154, gene:ENSEOMG00000041088, gene:ENSEOMG00000046104
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.3AG0016640, CQ.Regalona.r1.3BG0016510 ... CQ.Regalona.r1.7AG0014900, CQ.Regalona.r1.7BG0016800
Anacardiaceae	Pistacia vera	2	pistato.v30011350, pistato.v30238220
Apiaceae	Apium graveolens	5	Ag10G00772, Ag2G02426, Ag5G02458, Ag8G01695, Ag9G01820
Arecaceae	Cocos nucifera	2	COCNU_01G002780, scaffold006566G000150
Arecaceae	Phoenix dactylifera	2	gene-LOC103721036, gene-LOC103724227
Asparagaceae	Asparagus officinalis	2	AsparagusV1_02.2023.V1.1, AsparagusV1_07.935.V1.1
Asteraceae	Flaveria trinervia	3	Ftri10G03224, Ftri3G19980, Ftri9G25668
Brassicaceae	Arabidopsis thaliana	1	AT4G03020.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10028659m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp6g03060.v2.2
Brassicaceae	Brassica nigra	2	BniB08g039150.2N, BniB08g045690.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq06G1641
Casuarinaceae	Casuarina glauca	1	Cgl06G1701
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno04g05240
Dunaliellaceae	Dunaliella salina	1	Dusal.0973s00003.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate06g22820
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-6289, nbisL1-mrna-9649
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG04.239, evm.TU.LG11.1392, evm.TU.LG11.995
Plantaginaceae	Plantago ovata	1	Pov_00024805
Plumbaginaceae	Limonium bicolor	1	Lb8G36260
Poaceae	Echinochloa crus-galli	7	AH05.2503, AH05.775, BH02.1792, BH05.1002, BH05.2585 ... CH05.1145, CH05.2695
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_1AG0017480, gene-QOZ80_1BG0066380 ... gene-QOZ80_5AG0373540, gene-QOZ80_5AG0405310, gene-QOZ80_5BG0422710, gene-QOZ80_5BG0453440
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.1HG0014190.1, HORVU.MOREX.r3.1HG0019410.1 ... HORVU.MOREX.r3.1HG0062700.1
Poaceae	Lolium multiflorum	2	gene-QYE76_009485, gene-QYE76_013335
Poaceae	Oryza coarctata	5	Oco01G010620, Oco02G011360, Oco09G009060, Oco10G002120 ... Oco10G009530
Poaceae	Oryza sativa	3	LOC_Os01g28680.1, LOC_Os05g05210.1, LOC_Os05g33710.1
Poaceae	Paspalum vaginatum	2	gene-BS78_09G040800, gene-BS78_09G141300
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0500549, Pt_Chr0505205, Pt_Chr0506203
Poaceae	Sporobolus alterniflorus	5	Chr09G008020, Chr13G016820, Chr18G001260, Chr18G009000 ... Chr22G008650
Poaceae	Thinopyrum elongatum	4	Tel1E01G134700, Tel1E01G170400, Tel1E01G422800 ... Tel5E01G051200
Poaceae	Triticum dicoccoides	6	gene_TRIDC1AG008920, gene_TRIDC1AG012340 ... gene_TRIDC1AG038120, gene_TRIDC1BG011120, gene_TRIDC1BG015210, gene_TRIDC1BG042990
Poaceae	Triticum aestivum	9	TraesCS1A02G065300.2, TraesCS1A02G086800.2 ... TraesCS1A02G255000.1, TraesCS1B02G083400.1, TraesCS1B02G105200.2, TraesCS1B02G263400.2, TraesCS1D02G066000.1, TraesCS1D02G088200.1, TraesCS1D02G254400.1
Poaceae	Zea mays	2	Zm00001eb349670_P002, Zm00001eb354420_P001
Poaceae	Zoysia japonica	2	nbis-gene-18207, nbis-gene-52838
Poaceae	Zoysia macrostachya	3	Zma_g26411, Zma_g26852, Zma_g27685
Portulacaceae	Portulaca oleracea	4	evm.TU.LG03.2022, evm.TU.LG03.761, evm.TU.LG12.968 ... evm.TU.LG14.323
Posidoniaceae	Posidonia oceanica	1	gene.Posoc01g10740
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_3_RagTag.521, evm.TU.Scaffold_9_RagTag.875
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-1442, nbisL1-mrna-21349
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-19926, nbisL1-mrna-21386
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-18431, nbisL1-mrna-6245
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000003l.546, evm.TU.utg000019l.900
Rhizophoraceae	Kandelia obovata	2	Maker00009533, Maker00012425
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-1530, nbisL1-mrna-6297
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-2052, nbisL1-mrna-5182
Salicaceae	Populus euphratica	4	populus_peu07816, populus_peu22033, populus_peu22037 ... populus_peu27185
Solanaceae	Lycium barbarum	2	gene-LOC132605607, gene-LOC132645046
Solanaceae	Solanum chilense	2	SOLCI001973800, SOLCI002921100
Solanaceae	Solanum pennellii	2	gene-LOC107008401, gene-LOC107022037
Tamaricaceae	Reaumuria soongarica	1	gene_8484
Tamaricaceae	Tamarix chinensis	1	TC12G1524
Zosteraceae	Zostera marina	1	Zosma01g20360.v3.1