Basic Information
Locus ID:
evm.TU.utg000019l.797
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000019l | 8455677 | 8490073 | + | evm.TU.utg000019l.797 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.07 | 476,149.88 Da | 45.40 | 89.34 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 2646 | 2755 | 4.18149E-7 | - |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2307 | 2393 | 6.5E-9 | IPR009291 |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3265 | 3559 | 1.4E-13 | IPR009543 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 578 | 803 | 2.3E-30 | IPR031642 |
| Pfam | PF06398 | Integral peroxisomal membrane peroxin | 2901 | 3013 | 3.9E-7 | IPR010482 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2001 | 2168 | 1.4E-13 | IPR009291 |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 115 | 5.7E-31 | IPR026854 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 139 | 383 | 7.3E-70 | IPR031646 |
| Pfam | PF00168 | C2 domain | 2645 | 2747 | 7.6E-6 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 2628 | 2746 | 1.71E-8 | IPR035892 |
| SUPERFAMILY | SSF50729 | PH domain-like | 841 | 948 | 5.84E-8 | - |
| Gene3D | G3DSA:2.30.29.30 | - | 839 | 947 | 1.3E-6 | IPR011993 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 2630 | 2765 | 9.6E-8 | IPR035892 |
| SMART | SM00233 | PH_update | 832 | 943 | 0.0035 | IPR001849 |
| SMART | SM00239 | C2_3c | 2645 | 2764 | 2.0E-4 | IPR000008 |
| ProSiteProfiles | PS50003 | PH domain profile. | 831 | 941 | 7.1498 | IPR001849 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 2627 | 2765 | 11.209982 | IPR000008 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 4243 | 4259 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 4239 | 4259 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48090.4 | - | 0 |
| RefSeq | XP_021642898.1 | uncharacterized protein LOC110637210 [Hevea brasiliensis] | 0 |
| A1Z713 | Intermembrane lipid transfer protein Vps13 OS=Drosophila melanogaster OX=7227 GN=Vps13 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2MAA2 | Uncharacterized protein LOC8261314 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology