Basic Information
Locus ID:
evm.TU.utg000019l.795
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
DEAD-box ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000019l | 8436287 | 8442783 | + | evm.TU.utg000019l.795 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.08 | 138,308.02 Da | 65.58 | 59.46 | -0.74 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00201 | WW | 99 | 128 | 0.00360984 | IPR001202 |
| CDD | cd18787 | SF2_C_DEAD | 781 | 910 | 1.53745E-60 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 794 | 901 | 1.5E-31 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 586 | 756 | 6.6E-50 | IPR011545 |
| SUPERFAMILY | SSF51045 | WW domain | 90 | 129 | 1.88E-7 | IPR036020 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 633 | 917 | 3.81E-74 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 538 | 771 | 7.7E-86 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 772 | 942 | 4.2E-58 | IPR027417 |
| SMART | SM00487 | ultradead3 | 581 | 784 | 8.6E-65 | IPR014001 |
| SMART | SM00490 | helicmild6 | 817 | 901 | 3.6E-34 | IPR001650 |
| SMART | SM00456 | ww_5 | 97 | 130 | 3.8E-6 | IPR001202 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 796 | 940 | 25.586552 | IPR001650 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 96 | 130 | 10.7974 | IPR001202 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 562 | 590 | 9.985304 | IPR014014 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 593 | 767 | 30.609901 | IPR014001 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 102 | 128 | - | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 713 | 721 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1140 | 1187 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1026 | 1229 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 246 | 279 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1106 | 1124 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1125 | 1139 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1053 | 1096 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 341 | 356 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 176 | 195 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 328 | 356 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1188 | 1208 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 246 | 273 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06480.1 | DEAD box RNA helicase family protein. | 0 |
| RefSeq | XP_021684464.1 | DEAD-box ATP-dependent RNA helicase 46 [Hevea brasiliensis] | 0 |
| Q9SQV1 | DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana OX=3702 GN=RH40 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2C9W721 | DEAD-box ATP-dependent RNA helicase 46 OS=Manihot esculenta OX=3983 GN=MANES_03G080100 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology