Basic Information
Locus ID:
evm.TU.utg000019l.70
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000019l | 455973 | 467938 | + | evm.TU.utg000019l.70 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.42 | 161,742.31 Da | 51.49 | 70.48 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00201 | WW | 698 | 728 | 6.55445E-4 | IPR001202 |
| CDD | cd18787 | SF2_C_DEAD | 1054 | 1183 | 6.92606E-61 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1066 | 1174 | 2.9E-33 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 859 | 1029 | 2.2E-48 | IPR011545 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 514 | 628 | 1.1E-10 | IPR001525 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 320 | 510 | 2.16E-18 | IPR029063 |
| SUPERFAMILY | SSF51045 | WW domain | 689 | 729 | 8.39E-8 | IPR036020 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 907 | 1190 | 2.03E-74 | IPR027417 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 513 | 629 | 1.29E-16 | IPR029063 |
| Gene3D | G3DSA:1.10.8.10 | - | 41 | 97 | 3.9E-5 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 1045 | 1216 | 1.1E-57 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 691 | 736 | 2.4E-5 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 810 | 1044 | 9.2E-87 | IPR027417 |
| Gene3D | G3DSA:1.10.8.10 | - | 98 | 146 | 2.0E-6 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 472 | 644 | 4.2E-26 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 307 | 401 | 6.0E-5 | - |
| SMART | SM00487 | ultradead3 | 854 | 1057 | 5.1E-62 | IPR014001 |
| SMART | SM00456 | ww_5 | 696 | 729 | 5.6E-5 | IPR001202 |
| SMART | SM00490 | helicmild6 | 1094 | 1174 | 9.1E-35 | IPR001650 |
| ProSiteProfiles | PS51680 | SAM-dependent methyltransferase DRM-type domain profile. | 308 | 637 | 129.504791 | IPR030380 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 866 | 1040 | 29.308409 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1069 | 1213 | 25.666222 | IPR001650 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 695 | 729 | 11.1126 | IPR001202 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 835 | 863 | 10.505017 | IPR014014 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 986 | 994 | - | IPR000629 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 701 | 727 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 40 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1405 | 1431 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1367 | 1398 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 725 | 808 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1338 | 1461 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1234 | 1326 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1263 | 1297 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1436 | 1461 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 40 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 783 | 807 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 725 | 753 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.1 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 0 |
| RefSeq | XP_011047343.1 | PREDICTED: DEAD-box ATP-dependent RNA helicase 46 [Populus euphratica] | 0 |
| Q8H136 | DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana OX=3702 GN=RH14 PE=1 SV=2 | 0 | |
| TrEMBL | A0A7J6HXM1 | DNA (Cytosine-5)-methyltransferase DRM2 OS=Cannabis sativa OX=3483 GN=G4B88_021130 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology