Basic Information
Locus ID:
evm.TU.utg000019l.559
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
Rhamnogalacturonate lyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000019l | 4522265 | 4527320 | + | evm.TU.utg000019l.559 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.65 | 69,097.39 Da | 36.56 | 72.27 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10316 | RGL4_M | 306 | 403 | 3.17762E-31 | IPR029413 |
| CDD | cd10317 | RGL4_C | 417 | 603 | 1.02656E-50 | - |
| CDD | cd10320 | RGL4_N | 53 | 284 | 4.41057E-45 | - |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 415 | 602 | 2.3E-50 | IPR029411 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 48 | 227 | 1.5E-60 | IPR010325 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 329 | 399 | 3.3E-24 | IPR029413 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 55 | 276 | 4.39E-8 | IPR011013 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 412 | 603 | 1.45E-42 | IPR008979 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 349 | 405 | 1.31E-7 | IPR013784 |
| Gene3D | G3DSA:2.70.98.10 | - | 51 | 301 | 7.3E-16 | IPR014718 |
| Gene3D | G3DSA:2.60.120.260 | - | 413 | 603 | 6.3E-14 | - |
| Gene3D | G3DSA:2.60.40.1120 | - | 303 | 404 | 2.1E-8 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G22620.1 | Rhamnogalacturonate lyase family protein. | 0 |
| RefSeq | XP_012081708.1 | probable rhamnogalacturonate lyase B isoform X1 [Jatropha curcas] | 0 |
| TrEMBL | A0A067K103 | rhamnogalacturonan endolyase OS=Jatropha curcas OX=180498 GN=JCGZ_18737 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology