Basic Information
Locus ID:
evm.TU.utg000019l.540
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
Cytochrome c oxidase subunit 6a
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000019l | 4302415 | 4303991 | - | evm.TU.utg000019l.540 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.95 | 11,279.82 Da | 39.86 | 66.40 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF81411 | Mitochondrial cytochrome c oxidase subunit VIa | 32 | 98 | 5.23E-17 | IPR036418 |
| Gene3D | G3DSA:4.10.95.10 | Cytochrome c oxidase, subunit VIa | 29 | 100 | 3.2E-14 | IPR036418 |
| PIRSF | PIRSF000277 | COX_VIa | 1 | 100 | 3.9E-22 | IPR001349 |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G37830.1 | cytochrome c oxidase-related. | 0 |
| RefSeq | XP_021275112.1 | cytochrome c oxidase subunit 6a, mitochondrial [Herrania umbratica] | 0 |
| Q9T070 | Cytochrome c oxidase subunit 6a, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=COX6A PE=3 SV=1 | 0 | |
| TrEMBL | A0A2P2JTT1 | Cytochrome c oxidase subunit 6a OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg39893 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah026525 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g137250 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13310, Sbi_jg52539 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9301 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00013333 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl34471, Sgl39884 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000003052, gene:ENSEOMG00000003854 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.6BG0018670 |
| Anacardiaceae | Pistacia vera | 8 | pistato.v30072660, pistato.v30105500, pistato.v30131380 ... |
| Apiaceae | Apium graveolens | 2 | Ag5G00397, Ag9G01291 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G019430, COCNU_14G009910 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103696908, gene-LOC103704262, gene-LOC103707633 ... |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_03.2403.V1.1, AsparagusV1_03.2442.V1.1 ... |
| Asteraceae | Flaveria trinervia | 3 | Ftri17G15502, Ftri18G22597, Ftri6G20571 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G37830.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10026651m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g35470.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g014480.2N, BniB05g001240.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0422 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0441 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno10g09100, gene.Cymno14g06640 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate02g09480, gene.Thate05g28510, gene.Thate06g07120 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-10590 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2624 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00024123 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb1G05832, Lb2G11890, Lb8G35745, Lb8G36415 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.52, BH01.588, CH01.566 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_3AG0214240, gene-QOZ80_3BG0259530 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_061587 |
| Poaceae | Oryza coarctata | 2 | Oco05G024760, Oco14G005080 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g56190.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G065800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0107409, Pt_Chr0206575 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr01G003980, Chr04G019830, Chr04G029620, Chr06G020760 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel5E01G641800, Tel6E01G298600, Tel7E01G886400 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1BG059210, gene_TRIDC5AG059060 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS4B02G150100.1, TraesCS5A02G406700.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb058950_P001 |
| Poaceae | Zoysia japonica | 4 | nbis-gene-15210, nbis-gene-16323, nbis-gene-42115 ... |
| Poaceae | Zoysia macrostachya | 4 | Zma_g25401, Zma_g2677, Zma_g28063, Zma_g382 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.954, evm.TU.LG15.867 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g18660 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.1748 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-17414, nbisL1-mrna-807 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-1003, nbisL1-mrna-16370 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12022 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.1062, evm.TU.utg000019l.540 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008381 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-15419, nbisL1-mrna-6174 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-1858, nbisL1-mrna-3340 |
| Salicaceae | Populus euphratica | 1 | populus_peu23734 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132617233, gene-LOC132621760 |
| Solanaceae | Solanum chilense | 2 | SOLCI000339800, SOLCI000998600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008665 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_15580 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G0309 |
| Zosteraceae | Zostera marina | 1 | Zosma03g02830.v3.1 |