Basic Information
Locus ID:
evm.TU.utg000019l.416
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
transcriptional corepressor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000019l | 3147792 | 3155778 | + | evm.TU.utg000019l.416 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.29 | 84,179.33 Da | 44.27 | 71.08 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 489 | 774 | 2.13582E-67 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 575 | 611 | 6.2E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 531 | 567 | 1.5E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 743 | 774 | 0.041 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 496 | 525 | 4.6E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 657 | 691 | 3.8E-5 | IPR001680 |
| Pfam | PF08513 | LisH | 10 | 36 | 1.4E-7 | IPR006594 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 486 | 774 | 1.67E-66 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 623 | 774 | 6.5E-31 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 345 | 622 | 2.5E-35 | IPR015943 |
| SMART | SM00667 | Lish | 8 | 40 | 5.3E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 735 | 774 | 8.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 694 | 733 | 0.36 | IPR001680 |
| SMART | SM00320 | WD40_4 | 653 | 691 | 2.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 614 | 650 | 13.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 486 | 525 | 1.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 571 | 611 | 3.7E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 528 | 567 | 4.2E-7 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 660 | 700 | 8.971213 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 493 | 534 | 11.410742 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 742 | 774 | 11.64467 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 742 | 774 | 11.049229 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 535 | 567 | 10.416506 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.630869 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 493 | 528 | 8.861059 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 578 | 620 | 10.642123 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 535 | 567 | 12.513543 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 578 | 612 | 8.755605 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 512 | 526 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 512 | 526 | 5.7E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 761 | 774 | 5.7E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 554 | 568 | 5.7E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 327 | 396 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_015574101.1 | transcriptional corepressor LEUNIG_HOMOLOG isoform X2 [Ricinus communis] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2MFZ5 | Transcriptional corepressor LEUNIG_HOMOLOG isoform X2 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology