Basic Information
Locus ID:
evm.TU.utg000019l.367
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
Ubx domain-containing
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000019l | 2701862 | 2707586 | + | evm.TU.utg000019l.367 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.75 | 60,185.35 Da | 46.41 | 70.29 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01767 | UBX | 342 | 415 | 5.75323E-17 | - |
| Pfam | PF00789 | UBX domain | 337 | 415 | 1.5E-14 | IPR001012 |
| SUPERFAMILY | SSF52833 | Thioredoxin-like | 10 | 118 | 3.85E-14 | IPR036249 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 337 | 417 | 7.65E-16 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 332 | 417 | 6.8E-21 | - |
| Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 13 | 120 | 3.6E-10 | - |
| SMART | SM00166 | ubx_3 | 333 | 416 | 1.3E-7 | IPR001012 |
| ProSiteProfiles | PS50033 | UBX domain profile. | 336 | 414 | 17.840815 | IPR001012 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 236 | 251 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 494 | 526 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 137 | 179 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 183 | 235 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 468 | 535 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 468 | 486 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 137 | 311 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 297 | 311 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G43210.1 | Ubiquitin-like superfamily protein. | 0 |
| RefSeq | XP_021638795.1 | plant UBX domain-containing protein 11-like isoform X2 [Hevea brasiliensis] | 0 |
| Q9ZW74 | Plant UBX domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=PUX11 PE=1 SV=2 | 0 | |
| TrEMBL | A0A067LEC8 | UBX domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_23807 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg10978 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30243470 |
| Apiaceae | Apium graveolens | 1 | Ag8G01190 |
| Arecaceae | Cocos nucifera | 1 | scaffold020456G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103717528 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.1033.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri2G25455 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G43210.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10001393m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g25330.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g002960.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0943 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1025 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g10240 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.119 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00021419 |
| Poaceae | Echinochloa crus-galli | 2 | AH04.1115, CH04.1237 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_9AG0677360 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0341630.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_063877 |
| Poaceae | Oryza coarctata | 2 | Oco21G004670, Oco22G005250 |
| Poaceae | Oryza sativa | 1 | LOC_Os11g18880.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G135200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0107741 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr31G003930, Chr31G003950 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G118600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG038050, gene_TRIDC4BG011370 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G241200.1, TraesCS4B02G073900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb198990_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-23415, nbis-gene-43424 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g17824, Zma_g18695 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g15600 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-1765, nbisL1-mrna-5729 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-12547 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2683 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.367 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001628 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12296 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12818 |
| Salicaceae | Populus euphratica | 1 | populus_peu22649 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132610436 |
| Solanaceae | Solanum chilense | 1 | SOLCI001209100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031436 |
| Zosteraceae | Zostera marina | 1 | Zosma03g16550.v3.1 |