Basic Information
Locus ID:
evm.TU.utg000019l.1071
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000019l | 10787237 | 10789381 | - | evm.TU.utg000019l.1071 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.64 | 38,541.15 Da | 51.85 | 80.60 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 157 | 201 | 1.87313E-29 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 158 | 199 | 9.5E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 155 | 212 | 3.91E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 148 | 221 | 3.4E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 159 | 199 | 6.8E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 159 | 200 | 13.374458 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 174 | 183 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 61 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 214 | 244 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23780.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021630342.1 | E3 ubiquitin-protein ligase RNF185 [Manihot esculenta] | 0 |
| Q96GF1 | E3 ubiquitin-protein ligase RNF185 OS=Homo sapiens OX=9606 GN=RNF185 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2KMX6 | RING-type E3 ubiquitin transferase OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology