Basic Information
Locus ID:
evm.TU.utg000019l.1070
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
DA1-related 1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000019l | 10761496 | 10765192 | + | evm.TU.utg000019l.1070 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.37 | 57,224.39 Da | 63.90 | 68.18 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 134 | 186 | 4.38042E-29 | - |
| Pfam | PF00412 | LIM domain | 134 | 189 | 1.3E-9 | IPR001781 |
| Pfam | PF12315 | Protein DA1 | 283 | 500 | 7.8E-104 | IPR022087 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 160 | 218 | 6.45E-8 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 126 | 159 | 1.57E-8 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 128 | 192 | 2.3E-14 | - |
| SMART | SM00726 | uim | 40 | 59 | 120.0 | IPR003903 |
| SMART | SM00132 | lim_4 | 133 | 185 | 8.1E-12 | IPR001781 |
| SMART | SM00726 | uim | 94 | 113 | 0.55 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 94 | 113 | 9.16764 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 132 | 192 | 11.6326 | IPR001781 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 134 | 168 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 56 | 86 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 428 | 451 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 428 | 447 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.1 | LIM domain-containing protein. | 0 |
| RefSeq | XP_021630216.1 | protein DA1-related 1 isoform X2 [Manihot esculenta] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A2P2JXU8 | Uncharacterized protein MANES_12G102600 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology