Basic Information
Locus ID:
evm.TU.utg000018l.950
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
DNA (cytosine-5)-methyltransferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000018l | 9852445 | 9860209 | + | evm.TU.utg000018l.950 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.72 | 100,813.96 Da | 47.15 | 79.04 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 441 | 496 | 1.22001E-28 | - |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 793 | 857 | 5.3E-13 | IPR001525 |
| Pfam | PF01426 | BAH domain | 180 | 287 | 5.5E-9 | IPR001025 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 506 | 620 | 5.5E-16 | IPR001525 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 441 | 494 | 8.9E-10 | IPR023780 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 427 | 503 | 1.41E-13 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 330 | 858 | 4.38E-74 | IPR029063 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 659 | 824 | 1.5E-240 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 331 | 875 | 1.5E-240 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 105 | 274 | 3.4E-45 | IPR043151 |
| SMART | SM00439 | BAH_4 | 171 | 289 | 9.1E-15 | IPR001025 |
| SMART | SM00298 | chromo_7 | 440 | 499 | 4.7E-4 | IPR000953 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 441 | 494 | 11.3086 | IPR000953 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 171 | 289 | 18.523975 | IPR001025 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 329 | 865 | 43.073223 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 600 | 613 | 8.1E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 330 | 346 | 8.1E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 554 | 568 | 8.1E-11 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 423 | 437 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 58 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 75 | 156 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 78 | 101 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 417 | 437 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_021606189.1 | DNA (cytosine-5)-methyltransferase CMT3 [Manihot esculenta] | 0 |
| Q94F88 | DNA (cytosine-5)-methyltransferase CMT3 OS=Arabidopsis thaliana OX=3702 GN=CMT3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2C9W5R9 | Cytosine-specific methyltransferase OS=Manihot esculenta OX=3983 GN=MANES_03G089100 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology