Basic Information
Locus ID:
evm.TU.utg000018l.829
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000018l | 8859598 | 8864671 | + | evm.TU.utg000018l.829 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.70 | 57,754.95 Da | 68.89 | 84.01 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 264 | 312 | 1.51819E-15 | - |
| Pfam | PF12906 | RING-variant domain | 264 | 311 | 2.0E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 260 | 315 | 1.85E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 249 | 320 | 2.9E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 263 | 312 | 2.4E-19 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 256 | 318 | 18.771143 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 70 | 95 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 478 | 498 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 54 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 54 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 478 | 526 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 12 | 37 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_024037705.1 | uncharacterized protein LOC18039342 [Citrus clementina] | 0 |
| TrEMBL | A0A7J7BV64 | RING-CH-type domain-containing protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW23G00289 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology