Basic Information
Locus ID:
evm.TU.utg000018l.544
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
Alkylated DNA repair protein alkB homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000018l | 6726302 | 6727732 | + | evm.TU.utg000018l.544 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.02 | 43,654.30 Da | 37.06 | 88.98 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02440 | AdoMet_MTases | 124 | 220 | 4.52134E-11 | - |
| Pfam | PF08241 | Methyltransferase domain | 125 | 215 | 8.0E-14 | IPR013216 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 71 | 242 | 8.75E-29 | IPR029063 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 100 | 391 | 5.3E-58 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 268 | 282 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 267 | 292 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G36310.1 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein. | 0 |
| RefSeq | XP_021605554.1 | tRNA (carboxymethyluridine(34)-5-O)-methyltransferase [Manihot esculenta] | 0 |
| Q94A09 | tRNA (carboxymethyluridine(34)-5-O)-methyltransferase OS=Arabidopsis thaliana OX=3702 GN=TRM9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2C9WHD7 | Methyltransf_11 domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_02G212400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg10550 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_875 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah029619 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg16017, Sbi_jg57010 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg24663 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018425 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl19076 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000007282, gene:ENSEOMG00000014549 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1AG0016000, CQ.Regalona.r1.1BG0009630 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30040490 |
| Apiaceae | Apium graveolens | 1 | Ag5G02900 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G006500 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103715224 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.160.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G22201, Ftri9G10693 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G36310.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10004311m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g30710.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g036540.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1981 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G2163 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g10750 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0882s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate06g08520, gene.Thate06g15350, gene.Thate08g11490 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.998 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00020689 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G11492, Lb4G22685 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.3499, BH07.3315, CH07.3379 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0145920, gene-QOZ80_2BG0201460 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0614630.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_025389, gene-QYE76_025391, gene-QYE76_048294 |
| Poaceae | Oryza coarctata | 2 | Oco03G021730, Oco04G022370 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g51490.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G280300 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0203285 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr06G002120, Chr09G019920, Chr0G013310, Chr13G004160 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G544900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG045740, gene_TRIDC6BG053460 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G303100.1, TraesCS6B02G333000.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb255040_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-21820, nbis-gene-8693 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g14440, Zma_g17153 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.1270, evm.TU.LG05.1803 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g23410 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.1037, evm.TU.Scaffold_8_RagTag.700 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-9536 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-19172, nbisL1-mrna-2147 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6858 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000002l.786, evm.TU.utg000018l.544 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003714, Maker00010574 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8188 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9905 |
| Salicaceae | Populus euphratica | 1 | populus_peu32329 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627448 |
| Solanaceae | Solanum chilense | 1 | SOLCI005732700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015589 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.30787_chr10_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G0521 |
| Zosteraceae | Zostera marina | 1 | Zosma01g29730.v3.1 |