Basic Information
Locus ID:
evm.TU.utg000018l.48
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
Heterogeneous nuclear ribonucleoprotein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000018l | 413614 | 424470 | + | evm.TU.utg000018l.48 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.02 | 115,049.75 Da | 39.81 | 83.08 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12327 | RRM2_DAZAP1 | 674 | 753 | 2.79266E-47 | IPR034131 |
| CDD | cd12325 | RRM1_hnRNPA_hnRNPD_like | 578 | 648 | 4.78728E-39 | - |
| Pfam | PF00069 | Protein kinase domain | 325 | 563 | 1.5E-21 | IPR000719 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 578 | 635 | 1.8E-15 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 678 | 736 | 4.6E-15 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 671 | 771 | 1.34E-24 | IPR035979 |
| SUPERFAMILY | SSF52058 | L domain-like | 37 | 389 | 8.5E-22 | - |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 571 | 673 | 2.42E-26 | IPR035979 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 328 | 571 | 8.28E-41 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 33 | 213 | 1.4E-26 | IPR032675 |
| Gene3D | G3DSA:3.30.70.330 | - | 673 | 759 | 5.9E-26 | IPR012677 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 384 | 577 | 1.9E-33 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 276 | 382 | 6.2E-10 | - |
| Gene3D | G3DSA:3.30.70.330 | - | 578 | 658 | 6.2E-27 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 577 | 648 | 1.2E-24 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 677 | 749 | 1.8E-24 | IPR000504 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 307 | 568 | 23.085781 | IPR000719 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 676 | 753 | 17.779287 | IPR000504 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 152 | 173 | 7.072797 | IPR001611 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 576 | 652 | 17.813398 | IPR000504 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 27 | 6.0 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 194 | 216 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G07810.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_021595410.1 | heterogeneous nuclear ribonucleoprotein 1 [Manihot esculenta] | 0 |
| Q8W034 | Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1R3IMB0 | Protein kinase domain-containing protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_11276 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 1 | pistato.v30155410 |
| Apiaceae | Apium graveolens | 2 | Ag2G01689, Ag3G00496 |
| Arecaceae | Cocos nucifera | 1 | scaffold000201G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103698808, gene-LOC120109517 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G00878 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1426 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G1597 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-9058 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1974 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_1AG0014450 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.106, evm.TU.Scaffold_8_RagTag.1618 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-8737 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-398 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15073 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000028l.32, evm.TU.utg000018l.48 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-20483 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23775 |
| Salicaceae | Populus euphratica | 3 | populus_peu17849, populus_peu33589, populus_peu33645 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132617527 |
| Solanaceae | Solanum chilense | 1 | SOLCI007445400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107025324 |
| Zosteraceae | Zostera marina | 1 | Zosma02g19760.v3.1 |