Basic Information
Locus ID:
evm.TU.utg000018l.478
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Short Name:
UBP16
Description:
ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000018l | 6123924 | 6131629 | - | evm.TU.utg000018l.478 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.80 | 120,508.93 Da | 53.50 | 68.88 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 576 | 878 | 4.65963E-129 | - |
| Pfam | PF01753 | MYND finger | 77 | 114 | 5.5E-8 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 575 | 877 | 6.8E-44 | IPR001394 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 74 | 118 | 2.27E-10 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 571 | 883 | 2.35E-85 | IPR038765 |
| Gene3D | G3DSA:6.10.140.2220 | - | 66 | 118 | 3.6E-11 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 567 | 888 | 7.2E-91 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 77 | 114 | 11.602668 | IPR002893 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 575 | 880 | 49.730804 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 576 | 591 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 457 | 502 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 149 | 166 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 475 | 502 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 149 | 173 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 892 | 930 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1071 | 1104 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 956 | 982 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 904 | 930 | - | - |
| Coils | Coil | Coil | 38 | 58 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24560.1 | ubiquitin-specific protease 16. Encodes a ubiquitin-specific protease. There is no evidence for a phenotype in ubp16-1 mutants, however, double mutant analysis with ubp15 mutants reveals a role for UBP16 in plant development and cell proliferation. | 0 |
| RefSeq | XP_021643095.1 | ubiquitin carboxyl-terminal hydrolase 17-like [Hevea brasiliensis] | 0 |
| Q9SB51 | Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana OX=3702 GN=UBP16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2L7B7 | Ubiquitin carboxyl-terminal hydrolase 16-like OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology