Basic Information
Locus ID:
evm.TU.utg000018l.456
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
Large proline-rich protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000018l | 5956901 | 5963693 | - | evm.TU.utg000018l.456 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.15 | 101,420.81 Da | 48.18 | 74.89 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 26 | 93 | 9.50162E-24 | - |
| Pfam | PF00240 | Ubiquitin family | 26 | 96 | 6.2E-22 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 19 | 97 | 3.22E-25 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 20 | 109 | 8.0E-27 | - |
| SMART | SM00213 | ubq_7 | 24 | 95 | 1.1E-22 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 24 | 99 | 22.76539 | IPR000626 |
| ProSitePatterns | PS00299 | Ubiquitin domain signature. | 50 | 75 | - | IPR019954 |
| PRINTS | PR00348 | Ubiquitin signature | 76 | 97 | 8.7E-7 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 55 | 75 | 8.7E-7 | IPR019956 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 192 | 216 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 96 | 122 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 866 | 892 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 691 | 708 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 96 | 128 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 645 | 660 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 640 | 708 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42220.1 | Ubiquitin-like superfamily protein. | 0 |
| RefSeq | XP_021612492.1 | ubiquitin-like domain-containing protein CIP73 isoform X1 [Manihot esculenta] | 0 |
| D5LXJ0 | Ubiquitin-like domain-containing protein CIP73 OS=Lotus japonicus OX=34305 GN=CIP73 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2LMS5 | Scythe/bat3 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg11686 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8683 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035970 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g217800 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg10192, Sbi_jg39933, Sbi_jg55268 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg14402, Seu_jg222 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014171 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl12070, Sgl12071, Sgl12266, Sgl17365, Sgl17366, Sgl17496 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000019745, gene:ENSEOMG00000032958 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0022380, CQ.Regalona.r1.1BG0001890 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30048680, pistato.v30282420 |
| Apiaceae | Apium graveolens | 1 | Ag3G02556 |
| Arecaceae | Cocos nucifera | 1 | COCNU_15G000450 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103705892 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.291.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri13G01361, Ftri16G04901, Ftri2G05859 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G42220.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003631m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g08390.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g018400.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0796 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G0881 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno05g14500, gene.Cymno13g04240 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g07660 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-1395, nbisL1-mrna-1757 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.125 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00017370, Pov_00020558 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G02836 |
| Poaceae | Echinochloa crus-galli | 2 | AH08.2254, BH08.2388 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0639330, gene-QOZ80_8BG0667960 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0541060.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_019226 |
| Poaceae | Oryza coarctata | 2 | Oco13G007900, Oco14G008410 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g31540.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G213300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0200736, Pt_Chr0204747 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr16G018490, Chr17G017610, Chr20G002490, Chr29G000970 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G050200 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC4BG021580, gene_TRIDC6AG001500 ... |
| Poaceae | Triticum aestivum | 4 | TraesCS6A02G013700.2, TraesCS6A02G013800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb198450_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-17574 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g24469 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.541, evm.TU.LG12.1181 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g30320 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.1334 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-9124 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-21159 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15315 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.456 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003017 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3294 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-11179 |
| Salicaceae | Populus euphratica | 3 | populus_peu15439, populus_peu15440, populus_peu33080 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132628175 |
| Solanaceae | Solanum chilense | 1 | SOLCI002187400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107017836 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_1865 |
| Tamaricaceae | Tamarix chinensis | 2 | TC04G2490, TC09G1118 |
| Zosteraceae | Zostera marina | 2 | Zosma03g06660.v3.1, Zosma05g28000.v3.1 |