Basic Information
Locus ID:
evm.TU.utg000018l.448
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
Hippocampus abundant transcript 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000018l | 5832736 | 5842355 | + | evm.TU.utg000018l.448 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.14 | 47,820.75 Da | 30.32 | 104.38 | 0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17330 | MFS_SLC46_TetA_like | 10 | 423 | 1.23068E-60 | - |
| Pfam | PF07690 | Major Facilitator Superfamily | 10 | 385 | 2.4E-28 | IPR011701 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 10 | 426 | 2.09E-40 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 7 | 431 | 3.7E-42 | IPR036259 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 1 | 192 | 9.995064 | IPR020846 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42210.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_021635981.1 | hippocampus abundant transcript-like protein 1 isoform X1 [Hevea brasiliensis] | 0 |
| P02980 | Tetracycline resistance protein, class B OS=Escherichia coli OX=562 GN=tetA PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2MKK2 | Hippocampus abundant transcript-like protein 1 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology