Basic Information
Locus ID:
evm.TU.utg000018l.438
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000018l | 5709528 | 5713985 | + | evm.TU.utg000018l.438 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.57 | 47,764.46 Da | 44.18 | 100.23 | 0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 392 | 430 | 9.9E-7 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 393 | 432 | 3.28E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 189 | 226 | 3.47E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 387 | 433 | 1.1E-9 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 156 | 234 | 1.1E-9 | IPR013083 |
| SMART | SM00184 | ring_2 | 392 | 429 | 0.49 | IPR001841 |
| SMART | SM00184 | ring_2 | 190 | 226 | 0.053 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 392 | 430 | 9.391148 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G17730.1 | NEP-interacting protein 2. Intrinsic thylakoid membrane protein that fixes RPOTmp on the stromal side of the thylakoid membrane. | 0 |
| RefSeq | XP_021635993.1 | NEP1-interacting protein-like 1 [Hevea brasiliensis] | 0 |
| Q8GT74 | NEP1-interacting protein 2 OS=Arabidopsis thaliana OX=3702 GN=NIP2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A151QUZ7 | RING-H2 finger protein ATL4M OS=Cajanus cajan OX=3821 GN=KK1_044987 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_8_RagTag.1302, evm.TU.Scaffold_8_RagTag.1307 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5000 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15343 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.438 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003086, Maker00003506 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3312 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-11155 |
| Salicaceae | Populus euphratica | 2 | populus_peu15406, populus_peu33049 |