Basic Information
Locus ID:
evm.TU.utg000016l.804
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000016l | 6459591 | 6462943 | + | evm.TU.utg000016l.804 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.79 | 62,961.32 Da | 51.32 | 79.42 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 291 | 326 | 7.3E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 455 | 489 | 0.0028 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 419 | 450 | 4.2E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 291 | 550 | 1.46E-39 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 435 | 564 | 2.1E-22 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 282 | 434 | 1.1E-16 | IPR015943 |
| SMART | SM00320 | WD40_4 | 453 | 490 | 5.2E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 284 | 326 | 0.045 | IPR001680 |
| SMART | SM00320 | WD40_4 | 366 | 405 | 8.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 413 | 450 | 3.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 496 | 537 | 94.0 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 62 | 88 | 9.582141 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 294 | 326 | 10.337415 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 460 | 489 | 8.65015 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 420 | 459 | 11.945434 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 420 | 453 | 9.388329 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 460 | 489 | 10.274523 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 294 | 335 | 13.315579 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 437 | 451 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 437 | 451 | 3.8E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 313 | 327 | 3.8E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 477 | 491 | 3.8E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 116 | 139 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_037493036.1 | zinc finger CCCH domain-containing protein 48 [Jatropha curcas] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2P2LRF0 | C3H1-type domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology