Basic Information
Locus ID:
evm.TU.utg000016l.67
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000016l | 471869 | 480958 | - | evm.TU.utg000016l.67 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.88 | 207,286.38 Da | 49.96 | 84.34 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1475 | 1888 | 2.50554E-118 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1523 | 1888 | 4.4E-77 | IPR000569 |
| SUPERFAMILY | SSF48371 | ARM repeat | 186 | 655 | 9.6E-42 | IPR016024 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1468 | 1886 | 3.92E-92 | IPR035983 |
| Gene3D | G3DSA:1.25.10.10 | - | 177 | 477 | 8.1E-54 | IPR011989 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1415 | 1656 | 4.4E-43 | - |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1765 | 1890 | 4.0E-31 | - |
| SMART | SM00185 | arm_5 | 344 | 382 | 8.4 | IPR000225 |
| SMART | SM00185 | arm_5 | 261 | 302 | 29.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 218 | 259 | 66.0 | IPR000225 |
| SMART | SM00119 | hect_3 | 1491 | 1894 | 1.8E-70 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1499 | 1896 | 54.05674 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1137 | 1173 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 67 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1053 | 1074 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 659 | 679 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 120 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1139 | 1172 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 990 | 1028 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 659 | 709 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 133 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 691 | 709 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 970 | 1092 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38600.1 | HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | 0 |
| RefSeq | XP_021659090.1 | E3 ubiquitin-protein ligase UPL3-like [Hevea brasiliensis] | 0 |
| Q6WWW4 | E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T2YZV7 | HECT-type E3 ubiquitin transferase OS=Populus deltoides OX=3696 GN=H0E87_008184 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology