Basic Information
Locus ID:
evm.TU.utg000016l.652
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000016l | 5206222 | 5207893 | - | evm.TU.utg000016l.652 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.70 | 24,377.80 Da | 62.46 | 72.43 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 98 | 150 | 1.47039E-13 | - |
| Pfam | PF12906 | RING-variant domain | 98 | 149 | 4.3E-10 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 94 | 153 | 3.3E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 85 | 158 | 3.0E-15 | IPR013083 |
| SMART | SM00744 | ringv_2 | 97 | 150 | 2.0E-17 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 90 | 156 | 19.333942 | IPR011016 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05830.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_037492569.1 | uncharacterized protein LOC105646670 [Jatropha curcas] | 0 |
| TrEMBL | A0A2P2QLP6 | RING-CH-type domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology