Basic Information
Locus ID:
evm.TU.utg000016l.52
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Short Name:
UBC23
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000016l | 388111 | 392950 | + | evm.TU.utg000016l.52 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.60 | 124,798.45 Da | 33.88 | 77.61 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 888 | 1035 | 3.51436E-32 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 890 | 1035 | 1.4E-22 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 869 | 1052 | 1.88E-39 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 850 | 1116 | 1.3E-79 | IPR016135 |
| SMART | SM00212 | ubc_7 | 888 | 1045 | 1.7E-20 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 885 | 1045 | 34.652679 | IPR000608 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 786 | 827 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 90 | 113 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 786 | 814 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 418 | 450 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 418 | 455 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 135 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G16920.1 | ubiquitin-conjugating enzyme 23. | 0 |
| RefSeq | XP_021609635.1 | probable ubiquitin-conjugating enzyme E2 23 [Manihot esculenta] | 0 |
| Q9ZVX1 | Probable ubiquitin-conjugating enzyme E2 23 OS=Arabidopsis thaliana OX=3702 GN=UBC23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2JDJ2 | Uncharacterized protein MANES_04G071900 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 5 | jg26129, jg28888, jg28889, jg30378, jg882 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21914 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah009645 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g213850 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg12251 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg21494 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00020458 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55480, Sgl61327 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000014525, gene:ENSEOMG00000039134 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0002690, CQ.Regalona.r1.9AG0021980 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30249090 |
| Apiaceae | Apium graveolens | 1 | Ag11G03585 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G003260 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103718297 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.2549.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri13G28072 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G16920.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10022524m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g30200.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g013060.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G1734 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G1875 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno10g09330 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g00150, gene.Thate07g01080 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-5646 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.331 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00001683, Pov_00007341 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G30063 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.1255, BH02.837, CH02.955 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0007990, gene-QOZ80_1BG0056770 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0222770.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_049135 |
| Poaceae | Oryza coarctata | 2 | Oco01G000980, Oco02G001010 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g03520.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G049000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0205512, Pt_Chr0206977 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G024510, Chr03G003370, Chr05G002420, Chr08G001640 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G060800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG005370, gene_TRIDC3BG004990 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G047700.3, TraesCS3B02G034500.5 ... |
| Poaceae | Zea mays | 2 | Zm00001eb125670_P001, Zm00001eb334990_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-32258, nbis-gene-7092 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g7525 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.1802, evm.TU.LG08.1109, evm.TU.LG09.133 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g09010 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.2333 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-6067 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-7923 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-3231 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000016l.52 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016498 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4610 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22470 |
| Salicaceae | Populus euphratica | 2 | populus_peu08691, populus_peu36660 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132599340 |
| Solanaceae | Solanum chilense | 1 | SOLCI006584600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007981 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.11769_chr02_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G0150 |
| Zosteraceae | Zostera marina | 2 | Zosma01g22290.v3.1, Zosma1314g00030.v3.1 |