Basic Information
Locus ID:
evm.TU.utg000016l.42
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
Hippocampus abundant transcript-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000016l | 328446 | 333344 | - | evm.TU.utg000016l.42 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.01 | 47,143.88 Da | 36.45 | 114.78 | 0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17330 | MFS_SLC46_TetA_like | 11 | 422 | 7.41888E-56 | - |
| Pfam | PF07690 | Major Facilitator Superfamily | 11 | 382 | 2.2E-30 | IPR011701 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 11 | 415 | 1.7E-38 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 8 | 421 | 3.1E-41 | IPR036259 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 1 | 193 | 9.909991 | IPR020846 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 306 | 327 | 3.5E-5 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 57 | 73 | 3.5E-5 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 366 | 389 | 3.5E-5 | IPR001958 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42210.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_011046630.1 | PREDICTED: hippocampus abundant transcript-like protein 1 [Populus euphratica] | 0 |
| Q96MC6 | Hippocampus abundant transcript 1 protein OS=Homo sapiens OX=9606 GN=MFSD14A PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2LF70 | Hippocampus abundant transcript-like protein 1 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology