Basic Information
Locus ID:
evm.TU.utg000016l.371
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000016l | 2885661 | 2897486 | + | evm.TU.utg000016l.371 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.62 | 131,108.80 Da | 44.42 | 76.08 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 52 | 176 | 6.27527E-40 | IPR002083 |
| CDD | cd02659 | peptidase_C19C | 194 | 522 | 9.21393E-169 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 196 | 517 | 3.6E-46 | IPR001394 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 621 | 872 | 3.2E-78 | IPR024729 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 882 | 1093 | 2.4E-57 | IPR029346 |
| Pfam | PF00917 | MATH domain | 58 | 176 | 9.3E-21 | IPR002083 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 49 | 185 | 6.21E-42 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 191 | 548 | 8.63E-98 | IPR038765 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 50 | 192 | 3.5E-52 | IPR008974 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 193 | 521 | 9.0E-90 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 798 | 895 | 3.3E-28 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 681 | 797 | 2.8E-45 | - |
| SMART | SM00061 | math_3 | 53 | 157 | 7.0E-21 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 196 | 520 | 40.174797 | IPR028889 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 51 | 176 | 38.775414 | IPR002083 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 436 | 453 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 197 | 212 | - | IPR018200 |
| Coils | Coil | Coil | 533 | 556 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.2 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_012090875.1 | ubiquitin carboxyl-terminal hydrolase 12 isoform X2 [Jatropha curcas] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2MFL2 | ubiquitinyl hydrolase 1 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology