Basic Information
Locus ID:
evm.TU.utg000016l.146
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
Ubiquitin fusion degradation protein 1 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000016l | 1016840 | 1021105 | - | evm.TU.utg000016l.146 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.53 | 49,152.72 Da | 47.81 | 75.42 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 58 | 229 | 3.3E-80 | IPR004854 |
| Gene3D | G3DSA:2.40.40.50 | - | 51 | 152 | 9.5E-44 | IPR042299 |
| Gene3D | G3DSA:3.10.330.10 | - | 154 | 227 | 1.8E-34 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 235 | 255 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 328 | 351 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 278 | 353 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 290 | 327 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21270.3 | ubiquitin fusion degradation 1. | 0 |
| RefSeq | XP_021671624.1 | ubiquitin fusion degradation protein 1 homolog isoform X2 [Hevea brasiliensis] | 0 |
| Q55BK0 | Ubiquitin fusion degradation protein 1 homolog OS=Dictyostelium discoideum OX=44689 GN=ufd1 PE=3 SV=1 | 0 | |
| TrEMBL | A0A2P2LDN7 | Ubiquitin fusion degradation protein 1 homolog isoform X2 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology