halophFGD

Basic Information

Locus ID: evm.TU.utg000015l.466

Species & Taxonomic ID: Kandelia candel & 61147

Genome Assembly: GCA_037832225.1

Description: Glutelin type-A

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
PERG.utg000015l	6004083	6005821	-	evm.TU.utg000015l.466

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.34	38,547.80 Da	27.19	89.75	-0.06

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd02243	cupin_11S_legumin_C	198	353	1.15863E-71	-
CDD	cd02242	cupin_11S_legumin_N	3	172	9.95796E-71	-
Pfam	PF00190	Cupin	199	337	6.8E-20	IPR006045
Pfam	PF00190	Cupin	10	157	1.6E-30	IPR006045
SUPERFAMILY	SSF51182	RmlC-like cupins	16	346	1.68E-48	IPR011051
Gene3D	G3DSA:2.60.120.10	Jelly Rolls	197	356	6.3E-47	IPR014710
Gene3D	G3DSA:2.60.120.10	Jelly Rolls	4	196	2.9E-37	IPR014710
SMART	SM00835	Cupin_1_3	3	157	5.6E-36	IPR006045
SMART	SM00835	Cupin_1_3	195	339	5.2E-13	IPR006045
PRINTS	PR00439	11-S seed storage protein family signature	276	291	3.5E-11	IPR006044
PRINTS	PR00439	11-S seed storage protein family signature	316	333	3.5E-11	IPR006044
PRINTS	PR00439	11-S seed storage protein family signature	294	312	3.5E-11	IPR006044
PRINTS	PR00439	11-S seed storage protein family signature	211	231	3.5E-11	IPR006044
PRINTS	PR00439	11-S seed storage protein family signature	258	274	3.5E-11	IPR006044

Gene Ontology

Molecular Function:

GO:0045735 (nutrient reservoir activity)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G07750.1	RmlC-like cupins superfamily protein.
RefSeq	XP_002531106.1	glutelin type-D 1 [Ricinus communis]
Swiss-Prot	Q9ZWA9	12S seed storage protein CRD OS=Arabidopsis thaliana OX=3702 GN=CRD PE=1 SV=1
TrEMBL	B9SYN7	Nutrient reservoir, putative OS=Ricinus communis OX=3988 GN=RCOM_0787760 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg27790, jg35797, jg8320, jg9306, jg9307
Aizoaceae	Mesembryanthemum crystallinum	2	gene_20262, gene_7039
Amaranthaceae	Atriplex hortensis	5	Ah000823, Ah000824, Ah019434, Ah028102, Ah031039
Amaranthaceae	Beta vulgaris	4	BVRB_5g114420, BVRB_7g159780, BVRB_7g174610, BVRB_7g174620
Amaranthaceae	Salicornia bigelovii	12	Sbi_jg24244, Sbi_jg24255, Sbi_jg27353, Sbi_jg27521 ... Sbi_jg31101, Sbi_jg32126, Sbi_jg33048, Sbi_jg33049, Sbi_jg33098, Sbi_jg8069, Sbi_jg8082, Sbi_jg8084
Amaranthaceae	Salicornia europaea	8	Seu_jg11940, Seu_jg11953, Seu_jg24990, Seu_jg24991 ... Seu_jg25789, Seu_jg25790, Seu_jg7821, Seu_jg7850
Amaranthaceae	Suaeda aralocaspica	6	GOSA_00004650, GOSA_00004651, GOSA_00004652, GOSA_00004653 ... GOSA_00012234, GOSA_00023600
Amaranthaceae	Suaeda glauca	7	Sgl24738, Sgl29889, Sgl34918, Sgl40317, Sgl54719, Sgl71468 ... Sgl75054
Amaranthaceae	Chenopodium album	10	gene:ENSEOMG00000007073, gene:ENSEOMG00000007510 ... gene:ENSEOMG00000013140, gene:ENSEOMG00000021325, gene:ENSEOMG00000031676, gene:ENSEOMG00000036572, gene:ENSEOMG00000038097, gene:ENSEOMG00000040166, gene:ENSEOMG00000043874, gene:ENSEOMG00000048419
Amaranthaceae	Chenopodium quinoa	9	CQ.Regalona.r1.1BG0003320, CQ.Regalona.r1.3AG0010140 ... CQ.Regalona.r1.3BG0010270, CQ.Regalona.r1.5AG0020410, CQ.Regalona.r1.5BG0021830, CQ.Regalona.r1.7AG0002170, CQ.Regalona.r1.7AG0020230, CQ.Regalona.r1.7BG0022800, CQ.Regalona.r1.9BG0003520
Anacardiaceae	Pistacia vera	1	pistato.v30059740
Apiaceae	Apium graveolens	4	Ag10G01049, Ag1G00051, AgUnG01170, AgUnG01171
Arecaceae	Cocos nucifera	2	COCNU_04G014920, scaffold011975G000040
Arecaceae	Phoenix dactylifera	2	gene-LOC103710574, gene-LOC103718026
Asparagaceae	Asparagus officinalis	1	AsparagusV1_01.1045.V1.1
Asteraceae	Flaveria trinervia	3	Ftri12G29425, Ftri14G13482, Ftri14G27146
Brassicaceae	Arabidopsis thaliana	2	AT1G07750.1, AT2G28680.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10008034m.g.v1.0, Thhalv10016860m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp4g02870.v2.2, Sp4g11550.v2.2
Brassicaceae	Brassica nigra	5	BniB01g015210.2N, BniB02g003750.2N, BniB03g002370.2N ... BniB06g017830.2N, BniB06g042950.2N
Casuarinaceae	Casuarina equisetifolia	4	Ceq07G1576, Ceq08G2268, Ceq08G2269, Ceq08G2288
Casuarinaceae	Casuarina glauca	9	Cgl07G1674, Cgl07G1676, Cgl07G1683, Cgl07G1687, Cgl07G1691 ... Cgl07G1692, Cgl08G2446, Cgl08G2447, Cgl08G2460
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno04g15640
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate01g33550, gene.Thate02g38740
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG08.737, evm.TU.LG08.738, evm.TU.LG09.1341
Plantaginaceae	Plantago ovata	3	Pov_00027084, Pov_00039974, Pov_00039975
Plumbaginaceae	Limonium bicolor	3	Lb2G13921, Lb8G36507, Lb8G36508
Poaceae	Echinochloa crus-galli	8	AH03.3887, AH04.515, AH05.965, BH03.4174, BH04.559, BH05.832 ... CH05.956, CH07.329
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_5AG0407480, gene-QOZ80_5BG0455770 ... gene-QOZ80_6AG0538920, gene-QOZ80_6BG0492240
Poaceae	Hordeum vulgare	6	HORVU.MOREX.r3.1HG0008450.1, HORVU.MOREX.r3.3HG0328330.1 ... HORVU.MOREX.r3.3HG0329530.1, HORVU.MOREX.r3.3HG0329560.1, HORVU.MOREX.r3.7HG0748960.1, HORVU.MOREX.r3.7HG0748980.1
Poaceae	Lolium multiflorum	13	gene-QYE76_008915, gene-QYE76_008917, gene-QYE76_029140 ... gene-QYE76_030581, gene-QYE76_030582, gene-QYE76_057190, gene-QYE76_058470, gene-QYE76_058474, gene-QYE76_058476, gene-QYE76_058888, gene-QYE76_058898, gene-QYE76_062409, gene-QYE76_062900
Poaceae	Oryza coarctata	5	Oco01G031310, Oco02G032460, Oco09G000830, Oco10G000910 ... Oco17G011360
Poaceae	Oryza sativa	2	LOC_Os01g74480.1, LOC_Os05g02520.1
Poaceae	Paspalum vaginatum	2	gene-BS78_05G089700, gene-BS78_09G017700
Poaceae	Puccinellia tenuiflora	8	Pt_Chr0105013, Pt_Chr0105019, Pt_Chr0108089, Pt_Chr0502227 ... Pt_Chr0502228, Pt_Chr0503647, Pt_Chr0503648, Pt_Chr0605857
Poaceae	Sporobolus alterniflorus	7	Chr01G013430, Chr01G013490, Chr06G004630, Chr10G007810 ... Chr12G023260, Chr12G023340, Chr15G006110
Poaceae	Thinopyrum elongatum	5	Tel1E01G096600, Tel1E01G601500, Tel3E01G887600 ... Tel3E01G897700, Tel7E01G951400
Poaceae	Triticum dicoccoides	14	gene_TRIDC1AG005310, gene_TRIDC1AG054290 ... gene_TRIDC1BG007350, gene_TRIDC1BG062090, gene_TRIDC3AG074430, gene_TRIDC3AG074470, gene_TRIDC3AG075210, gene_TRIDC3AG075220, gene_TRIDC3AG075240, gene_TRIDC3BG085750, gene_TRIDC3BG086580, gene_TRIDC3BG086610, gene_TRIDC7AG075990, gene_TRIDC7BG072680
Poaceae	Triticum aestivum	19	TraesCS1A02G045800.1, TraesCS1A02G369500.1 ... TraesCS1B02G059000.1, TraesCS1B02G388000.1.cds1, TraesCS1D02G046400.1, TraesCS1D02G375400.1, TraesCS3A02G526200.1.cds1, TraesCS3A02G526500.1, TraesCS3A02G531000.1, TraesCS3A02G531100.1, TraesCS3B02G593800.1, TraesCS3B02G601300.1, TraesCS3B02G601500.1, TraesCS3D02G531600.1, TraesCS3D02G536500.1, TraesCS7A02G545400.1, TraesCS7A02G545600.1, TraesCS7B02G468800.1, TraesCS7D02G531900.1
Poaceae	Zea mays	4	Zm00001eb132730_P001, Zm00001eb266290_P001 ... Zm00001eb355570_P001, Zm00001eb401380_P001
Poaceae	Zoysia japonica	4	nbis-gene-18340, nbis-gene-30499, nbis-gene-39261 ... nbis-gene-54062
Poaceae	Zoysia macrostachya	2	Zma_g27593, Zma_g30510
Portulacaceae	Portulaca oleracea	8	evm.TU.LG01.2280, evm.TU.LG03.2269, evm.TU.LG06.1098 ... evm.TU.LG11.416, evm.TU.LG14.1455, evm.TU.LG17.1315, evm.TU.LG18.170, evm.TU.LG26.899
Posidoniaceae	Posidonia oceanica	2	gene.Posoc01g34840, gene.Posoc10g01130
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_13_RagTag.803
Rhizophoraceae	Carallia pectinifolia	7	nbisL1-mrna-15408, nbisL1-mrna-15409, nbisL1-mrna-15410 ... nbisL1-mrna-15411, nbisL1-mrna-15413, nbisL1-mrna-30231, nbisL1-mrna-30234
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000015l.466
Rhizophoraceae	Kandelia obovata	1	Maker00015895
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-4385
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-15004
Salicaceae	Populus euphratica	14	populus_peu00491, populus_peu00492, populus_peu00493 ... populus_peu00494, populus_peu00497, populus_peu00498, populus_peu00499, populus_peu00500, populus_peu00501, populus_peu00502, populus_peu00503, populus_peu06139, populus_peu06871, populus_peu23364
Solanaceae	Lycium barbarum	5	gene-LOC132598697, gene-LOC132599488, gene-LOC132643519 ... gene-LOC132643520, gene-LOC132643932
Solanaceae	Solanum chilense	5	SOLCI001725100, SOLCI001725200, SOLCI001749400 ... SOLCI002908300, SOLCI003037200
Solanaceae	Solanum pennellii	5	gene-LOC107003226, gene-LOC107004324, gene-LOC107006653 ... gene-LOC107027773, gene-LOC107028782
Tamaricaceae	Reaumuria soongarica	1	STRG.19490_chr07_-
Tamaricaceae	Tamarix chinensis	3	TC04G0189, TC04G0196, TC11G2248
Zosteraceae	Zostera marina	1	Zosma02g21280.v3.1