Basic Information
Locus ID:
evm.TU.utg000015l.297
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000015l | 4550965 | 4559415 | + | evm.TU.utg000015l.297 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.15 | 99,569.60 Da | 38.29 | 80.02 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 698 | 878 | 2.04358E-56 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 285 | 877 | 2.2E-82 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 283 | 880 | 5.1E-108 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 642 | 883 | 7.3E-57 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 276 | 507 | 6.2E-66 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 285 | 880 | 57.169609 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 824 | 841 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 286 | 301 | - | IPR018200 |
| Coils | Coil | Coil | 879 | 883 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22030.1 | ubiquitin-specific protease 8. | 0 |
| RefSeq | XP_012066368.1 | ubiquitin carboxyl-terminal hydrolase 8 isoform X1 [Jatropha curcas] | 0 |
| Q9C585 | Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana OX=3702 GN=UBP8 PE=2 SV=2 | 0 | |
| TrEMBL | A0A067L3C7 | Ubiquitin carboxyl-terminal hydrolase OS=Jatropha curcas OX=180498 GN=JCGZ_23913 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology