Basic Information
Locus ID:
evm.TU.utg000015l.208
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000015l | 2604179 | 2607545 | + | evm.TU.utg000015l.208 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.17 | 105,349.77 Da | 36.47 | 109.98 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 126 | 145 | 1.5 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 803 | 927 | 1.8E-11 | IPR000719 |
| Pfam | PF00069 | Protein kinase domain | 695 | 791 | 2.6E-12 | IPR000719 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 33 | 73 | 1.1E-10 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 149 | 208 | 1.9E-9 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 687 | 939 | 1.83E-49 | IPR011009 |
| SUPERFAMILY | SSF52047 | RNI-like | 81 | 436 | 2.12E-63 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 365 | 601 | 6.46E-48 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 206 | 268 | 1.9E-16 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 677 | 780 | 1.5E-22 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 31 | 205 | 4.5E-48 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 269 | 339 | 5.9E-16 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 795 | 953 | 1.6E-33 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 340 | 626 | 3.9E-73 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 148 | 171 | 29.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 508 | 532 | 110.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 100 | 124 | 8.4 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 293 | 317 | 97.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 221 | 245 | 120.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 581 | 603 | 7.1036 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 693 | 934 | 14.237899 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 699 | 729 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G28440.1 | HAESA-like 1. | 0 |
| RefSeq | XP_034893766.1 | receptor-like protein kinase HSL1 [Populus alba] | 0 |
| Q9SGP2 | Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana OX=3702 GN=HSL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2IWX1 | Protein kinase domain-containing protein OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology