Basic Information
Locus ID:
evm.TU.utg000015l.130
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
RNA polymerase II C-terminal domain phosphatase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000015l | 1135493 | 1143448 | + | evm.TU.utg000015l.130 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.86 | 112,239.58 Da | 58.20 | 80.90 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00035 | Double-stranded RNA binding motif | 746 | 809 | 2.1E-5 | IPR014720 |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 294 | 403 | 3.6E-6 | IPR004274 |
| SUPERFAMILY | SSF56784 | HAD-like | 177 | 429 | 1.43E-17 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 879 | 958 | 3.64E-12 | - |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 745 | 809 | 3.8E-10 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 735 | 811 | 3.8E-6 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 876 | 956 | 7.4E-7 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 174 | 434 | 1.9E-25 | IPR023214 |
| SMART | SM00358 | DRBM_3 | 882 | 950 | 0.0091 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 746 | 810 | 1.3E-9 | IPR014720 |
| SMART | SM00577 | forpap2 | 237 | 413 | 8.3E-18 | IPR004274 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 178 | 426 | 15.196723 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 745 | 811 | 10.290316 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 881 | 951 | 10.557354 | IPR014720 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 64 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 568 | 594 | - | - |
| Coils | Coil | Coil | 42 | 67 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21670.1 | C-terminal domain phosphatase-like 1. encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. | 0 |
| RefSeq | XP_021670439.1 | RNA polymerase II C-terminal domain phosphatase-like 1 isoform X5 [Hevea brasiliensis] | 0 |
| Q5YDB6 | RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2LPS0 | protein-serine/threonine phosphatase OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology