Basic Information
Locus ID:
evm.TU.utg000015l.123
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000015l | 1063917 | 1074837 | + | evm.TU.utg000015l.123 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.30 | 146,725.38 Da | 46.28 | 79.44 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 1172 | 1282 | 5.43049E-52 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 576 | 903 | 2.30213E-84 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 598 | 980 | 1.9E-66 | IPR000330 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1170 | 1272 | 7.5E-15 | IPR001650 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 1019 | 1056 | 2.0E-5 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1016 | 1067 | 1.37E-10 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 911 | 1329 | 3.1E-53 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 563 | 903 | 1.3E-44 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 794 | 915 | 6.8E-29 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 545 | 637 | 1.7E-10 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 668 | 758 | 1.4E-10 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1003 | 1070 | 7.7E-10 | IPR013083 |
| Gene3D | G3DSA:3.40.50.300 | - | 1150 | 1326 | 1.6E-54 | IPR027417 |
| SMART | SM00487 | ultradead3 | 572 | 882 | 1.2E-29 | IPR014001 |
| SMART | SM00184 | ring_2 | 1019 | 1057 | 8.4E-4 | IPR001841 |
| SMART | SM00490 | helicmild6 | 1189 | 1272 | 5.1E-17 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1019 | 1058 | 10.409105 | IPR001841 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1166 | 1325 | 14.816111 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 688 | 865 | 11.816862 | IPR014001 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 1034 | 1043 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 457 | 474 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 753 | 790 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 753 | 776 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 475 | 493 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 454 | 496 | - | - |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61140.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_048231085.1 | helicase-like transcription factor CHR28 isoform X1 [Ricinus communis] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2KS41 | Uncharacterized protein LOC105649495 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology