Basic Information
Locus ID:
evm.TU.utg000013l.70
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000013l | 531904 | 533416 | + | evm.TU.utg000013l.70 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.35 | 39,900.01 Da | 45.42 | 76.49 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 305 | 344 | 1.2E-7 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 299 | 349 | 7.15E-10 | - |
| SUPERFAMILY | SSF81901 | HCP-like | 102 | 220 | 7.72E-12 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 36 | 97 | 4.09E-5 | IPR036047 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 89 | 242 | 2.2E-17 | IPR011990 |
| Gene3D | G3DSA:6.10.140.2220 | - | 296 | 348 | 3.0E-10 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 302 | 344 | 10.937226 | IPR002893 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_012085679.1 | F-box protein At1g67340 [Jatropha curcas] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2L240 | MYND-type domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology