Basic Information
Locus ID:
evm.TU.utg000013l.512
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000013l | 6590085 | 6594475 | + | evm.TU.utg000013l.512 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.83 | 42,495.24 Da | 52.66 | 80.74 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 2.73649E-30 | - |
| CDD | cd14382 | UBA2_RAD23_plant | 355 | 397 | 2.51876E-24 | - |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 4.1E-18 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 175 | 210 | 5.8E-12 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 278 | 333 | 5.2E-22 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 359 | 394 | 8.8E-12 | IPR015940 |
| SUPERFAMILY | SSF46934 | UBA-like | 340 | 401 | 8.93E-15 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 274 | 340 | 3.01E-22 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 169 | 223 | 9.05E-11 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 79 | 2.93E-22 | IPR029071 |
| Gene3D | G3DSA:1.10.8.10 | - | 165 | 215 | 2.2E-19 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 269 | 334 | 8.5E-28 | IPR036353 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 8.9E-28 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 351 | 398 | 3.7E-22 | - |
| SMART | SM00165 | uba_6 | 172 | 212 | 0.0099 | IPR015940 |
| SMART | SM00165 | uba_6 | 359 | 396 | 1.1E-8 | IPR015940 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 4.2E-20 | IPR000626 |
| SMART | SM00727 | CBM | 276 | 319 | 3.6E-6 | IPR006636 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 402 | 4.8E-114 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 170 | 213 | 11.655301 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 19.607956 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 356 | 397 | 14.643341 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 385 | 400 | 1.0E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 353 | 369 | 1.0E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 304 | 326 | 1.0E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 370 | 384 | 1.0E-33 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 77 | 120 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 121 | 141 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 77 | 146 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02540.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_021637897.1 | ubiquitin receptor RAD23c-like [Hevea brasiliensis] | 0 |
| Q84L31 | Ubiquitin receptor RAD23c OS=Arabidopsis thaliana OX=3702 GN=RAD23C PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2MDW7 | Ubiquitin receptor RAD23 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology