Basic Information
Locus ID:
evm.TU.utg000013l.457
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
SEC12-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000013l | 5955866 | 5958984 | + | evm.TU.utg000013l.457 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.87 | 44,207.82 Da | 42.44 | 89.41 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 299 | 354 | 2.5E-4 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 174 | 196 | 0.24 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 210 | 230 | 0.015 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 58 | 371 | 1.02E-34 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 61 | 379 | 1.1E-66 | IPR015943 |
| SMART | SM00320 | WD40_4 | 201 | 239 | 0.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 159 | 197 | 0.11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 291 | 330 | 2.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 333 | 373 | 1.4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 214 | 248 | 9.505904 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 31 | 46 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 31 | 63 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G01470.1 | SEC12P-like 2 protein. Sec12p-like protein (GTP exchange protein) that functionally complements yeast sec12 null mutant. Protein is localized to the ER. | 0 |
| RefSeq | XP_002526027.1 | SEC12-like protein 2 [Ricinus communis] | 0 |
| Q39221 | SEC12-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=STL2P PE=1 SV=4 | 0 | |
| TrEMBL | A0A2P2KSE6 | SEC12-like protein 2 isoform X2 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology