Basic Information
Locus ID:
evm.TU.utg000013l.424
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
Zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000013l | 5651123 | 5654322 | + | evm.TU.utg000013l.424 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.78 | 61,025.24 Da | 35.24 | 68.00 | -0.74 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 365 | 387 | 1.3E-5 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 286 | 310 | 1.1E-5 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 330 | 354 | 7.5E-7 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 326 | 357 | 7.85E-6 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 280 | 311 | 4.71E-7 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 359 | 393 | 1.44E-5 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 279 | 311 | 6.1E-13 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 360 | 393 | 1.3E-9 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 322 | 359 | 1.3E-12 | - |
| SMART | SM00547 | zf_4 | 332 | 356 | 6.4E-7 | IPR001876 |
| SMART | SM00547 | zf_4 | 365 | 389 | 5.0E-6 | IPR001876 |
| SMART | SM00547 | zf_4 | 288 | 312 | 6.0E-5 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 330 | 359 | 9.709803 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 286 | 315 | 9.325869 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 363 | 392 | 9.551712 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 290 | 309 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 367 | 386 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 334 | 353 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 397 | 416 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 491 | 536 | - | - |
| Coils | Coil | Coil | 238 | 258 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G70650.1 | Ran BP2/NZF zinc finger-like superfamily protein. | 0 |
| RefSeq | XP_024465182.2 | uncharacterized protein LOC7462679 isoform X1 [Populus trichocarpa] | 0 |
| TrEMBL | A0A2K1YS10 | Zinc finger protein VAR3, chloroplastic OS=Populus trichocarpa OX=3694 GN=POPTR_010G107400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology