Basic Information
Locus ID:
evm.TU.utg000012l.50
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000012l | 395694 | 398884 | - | evm.TU.utg000012l.50 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.90 | 67,927.94 Da | 45.48 | 79.39 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 400 | 533 | 2.04995E-63 | - |
| CDD | cd17920 | DEXHc_RecQ | 202 | 399 | 7.53561E-100 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 210 | 379 | 9.1E-17 | IPR011545 |
| Pfam | PF16124 | RecQ zinc-binding | 536 | 604 | 3.4E-13 | IPR032284 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 415 | 523 | 1.9E-15 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 248 | 544 | 7.14E-52 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 400 | 608 | 5.3E-59 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 168 | 399 | 2.6E-83 | IPR027417 |
| SMART | SM00490 | helicmild6 | 442 | 524 | 6.5E-22 | IPR001650 |
| SMART | SM00487 | ultradead3 | 204 | 408 | 4.1E-26 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 202 | 607 | 2.5E-152 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 414 | 564 | 18.132389 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 216 | 392 | 20.864431 | IPR014001 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 331 | 340 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 94 | 109 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 110 | 125 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 94 | 134 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05740.1 | RECQ helicase l1. | 0 |
| RefSeq | XP_021645845.1 | ATP-dependent DNA helicase Q-like 1 [Hevea brasiliensis] | 0 |
| Q9FT74 | ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana OX=3702 GN=RECQL1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A251K809 | ATP-dependent DNA helicase OS=Manihot esculenta OX=3983 GN=MANES_09G175300 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology