Basic Information
Locus ID:
evm.TU.utg000012l.361
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000012l | 3053005 | 3061138 | - | evm.TU.utg000012l.361 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.44 | 61,183.50 Da | 39.78 | 91.10 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16479 | RING-H2_synoviolin | 289 | 330 | 3.26301E-27 | - |
| Pfam | PF13639 | Ring finger domain | 291 | 330 | 1.2E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 272 | 336 | 5.08E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 264 | 337 | 8.0E-23 | IPR013083 |
| SMART | SM00184 | ring_2 | 292 | 329 | 7.6E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 292 | 330 | 12.622055 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 340 | 377 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 508 | 528 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 508 | 547 | - | - |
| Coils | Coil | Coil | 480 | 507 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16090.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021684278.1 | ERAD-associated E3 ubiquitin-protein ligase HRD1B-like [Hevea brasiliensis] | 0 |
| Q9LW77 | ERAD-associated E3 ubiquitin-protein ligase HRD1A OS=Arabidopsis thaliana OX=3702 GN=HRD1A PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2LH31 | ERAD-associated E3 ubiquitin-protein ligase HRD1B-like OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg5387, jg7134, jg9292 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_3435 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018379 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g049980 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg14854, Sbi_jg55630 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26186 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017954 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl01101, Sgl06185 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000003064, gene:ENSEOMG00000029388 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0007250, CQ.Regalona.r1.3BG0007330 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30095450 |
| Apiaceae | Apium graveolens | 1 | Ag10G02438 |
| Arecaceae | Cocos nucifera | 1 | COCNU_08G005470 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103716829 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_05.485.V1.1, AsparagusV1_08.107.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri16G11248, Ftri2G31926 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G65040.2, AT3G16090.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10020585m.g.v1.0, Thhalv10022466m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g14440.v2.2, Sp5g19570.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB05g061080.2N, BniB07g053670.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1996 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl09G2183, Cgl09G2191 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g19700 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0127s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g22770 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.1707 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00002329, Pov_00027048 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G24854, Lb6G30037 |
| Poaceae | Echinochloa crus-galli | 5 | AH06.1227, AH07.2349, BH06.1279, CH06.1411, CH07.2230 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0518320, gene-QOZ80_6BG0470380 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0674480.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_052303 |
| Poaceae | Oryza coarctata | 2 | Oco11G007840, Oco12G007850 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g19680.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G126200 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0404404, Pt_Chr0404407, Pt_Chr0603907, Pt_Chr0603926 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr10G001340, Chr11G017400, Chr14G007030, Chr15G011850 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G401200 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC3AG024980, gene_TRIDC7AG028070 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS3A02G179300.1, TraesCS3D02G184200.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb092590_P005, Zm00001eb197180_P004 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-52613 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g29541, Zma_g31780 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG02.1497, evm.TU.LG09.1231, evm.TU.LG09.506 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g02230 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_1_RagTag.599, evm.TU.Scaffold_1_RagTag.838 ... |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-7563 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2529 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5611 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000012l.361 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011092 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8441 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-710 |
| Salicaceae | Populus euphratica | 1 | populus_peu09039 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632234 |
| Solanaceae | Solanum chilense | 2 | SOLCI000095500, SOLCI001334600 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107015413, gene-LOC107023773 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.5528_chr04_+, gene_10738 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G0214 |
| Zosteraceae | Zostera marina | 1 | Zosma05g01190.v3.1 |