Basic Information
Locus ID:
evm.TU.utg000012l.21
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
Glycosyl hydrolases family 28
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000012l | 211240 | 213609 | + | evm.TU.utg000012l.21 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.82 | 51,652.28 Da | 50.22 | 82.82 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 109 | 431 | 4.0E-89 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 73 | 466 | 1.09E-125 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 73 | 461 | 6.8E-119 | IPR012334 |
| SMART | SM00710 | pbh1 | 221 | 270 | 2600.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 324 | 345 | 120.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 353 | 374 | 1500.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 294 | 314 | 5200.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 271 | 292 | 320.0 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 301 | 314 | - | IPR000743 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G02460.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_034896321.1 | polygalacturonase At1g48100-like [Populus alba] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7ZS49 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_018332 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology