Basic Information
Locus ID:
evm.TU.utg000011l.790
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
Polygalacturonase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000011l | 6142273 | 6144433 | + | evm.TU.utg000011l.790 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 51,814.05 Da | 48.27 | 72.75 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 115 | 428 | 2.3E-83 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 78 | 464 | 1.71E-128 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 71 | 465 | 1.3E-120 | IPR012334 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 299 | 312 | - | IPR000743 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 60 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48100.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_002519290.1 | polygalacturonase At1g48100 [Ricinus communis] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | B9RZX1 | Polygalacturonase, putative OS=Ricinus communis OX=3988 GN=RCOM_1002690 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology