Basic Information
Locus ID:
evm.TU.utg000011l.420
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
E3 ubiquitin-protein ligase LUL4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000011l | 3240448 | 3243939 | + | evm.TU.utg000011l.420 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.27 | 42,571.59 Da | 65.81 | 66.21 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 324 | 364 | 3.08863E-27 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 323 | 369 | 2.1E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 319 | 370 | 3.28E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 310 | 375 | 1.2E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 325 | 363 | 4.4E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 325 | 364 | 11.36805 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06140.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_002517156.1 | probable E3 ubiquitin-protein ligase LUL4 [Ricinus communis] | 0 |
| Q8LA32 | Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana OX=3702 GN=LUL4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2J815 | RING-type E3 ubiquitin transferase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology