Basic Information
Locus ID:
evm.TU.utg000011l.391
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
Zinc finger (C3HC4-type RING finger) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000011l | 3015148 | 3019048 | - | evm.TU.utg000011l.391 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.41 | 47,206.34 Da | 58.40 | 95.25 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 227 | 274 | 2.34971E-15 | - |
| Pfam | PF12906 | RING-variant domain | 227 | 273 | 2.9E-12 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 223 | 277 | 1.99E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 213 | 282 | 1.6E-17 | IPR013083 |
| SMART | SM00744 | ringv_2 | 226 | 274 | 1.1E-18 | IPR011016 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 227 | 274 | 8.594486 | IPR001841 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 219 | 280 | 21.598864 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 35 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 195 | 218 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 72 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06330.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_034898744.1 | uncharacterized protein LOC118036980 isoform X2 [Populus alba] | 0 |
| TrEMBL | A0A2P2JWT3 | Uncharacterized protein LOC8262371 isoform X1 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology