Basic Information
Locus ID:
evm.TU.utg000011l.39
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
Organic cation carnitine transporter
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000011l | 256941 | 259637 | + | evm.TU.utg000011l.39 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.00 | 59,598.00 Da | 36.51 | 100.56 | 0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07690 | Major Facilitator Superfamily | 347 | 481 | 2.3E-17 | IPR011701 |
| Pfam | PF00083 | Sugar (and other) transporter | 57 | 225 | 1.3E-33 | IPR005828 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 10 | 488 | 5.49E-80 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 19 | 491 | 2.2E-94 | IPR036259 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 26 | 482 | 42.93935 | IPR020846 |
| ProSitePatterns | PS00216 | Sugar transport proteins signature 1. | 358 | 373 | - | IPR005829 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 493 | 528 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13050.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_021617185.1 | organic cation/carnitine transporter 7 [Manihot esculenta] | 0 |
| Q940M4 | Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana OX=3702 GN=OCT7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2MQS8 | Organic cation/carnitine transporter 7-like OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology